Primertest data
toDO-1:
Sample CTs <15 or >50 and those with no numeric values skipped for
now.
Please correct these values in primer_aufbereitet_20240917.xlsx.
(columns: SignalCT_01,
SignalCT_02, SignalCT_03, SignalCT_04)
toDO-2:
BC CTs <20 or >50 and those with no numeric values skipped for
now.
Please correct these values in primer_aufbereitet_20240917.xlsx.
(columns: BC_01, BC_02, BC_03, BC_04)
| Rclass | 59 | 61 | 62 | 63 | 64 | 66 | Row_Sum |
|---|---|---|---|---|---|---|---|
| VdJd | 0 | 1 | 95 | 8 | 103 | 4 | 211 |
| intronKDE | 0 | 0 | 110 | 9 | 108 | 6 | 233 |
| VdJa | 0 | 2 | 142 | 9 | 149 | 3 | 305 |
| DdJd | 0 | 3 | 542 | 9 | 556 | 1 | 1111 |
| DdJa | 0 | 1 | 581 | 4 | 599 | 0 | 1185 |
| DdDd | 0 | 2 | 571 | 22 | 599 | 8 | 1202 |
| VdDd | 0 | 7 | 653 | 38 | 668 | 15 | 1381 |
| VkKDE | 0 | 3 | 689 | 34 | 706 | 16 | 1448 |
| DbJb | 0 | 5 | 736 | 53 | 779 | 29 | 1602 |
| VkJk | 0 | 2 | 837 | 38 | 877 | 5 | 1759 |
| VbJb | 0 | 3 | 1094 | 62 | 1141 | 35 | 2335 |
| DhJh | 0 | 8 | 2152 | 142 | 2168 | 54 | 4524 |
| VgJg | 0 | 9 | 3156 | 104 | 3289 | 1 | 6559 |
| VhJh | 2 | 12 | 3907 | 112 | 3584 | 43 | 7660 |
| Column_Sum | 2 | 58 | 15265 | 644 | 15326 | 220 | 31515 |
Follow-up data
Only assays with an available Rclass are included. In cases with multiple time-points, only the most recent value for each assay was retained.
toDO-3:
BC CTs <20 or >50 and those with no numeric values skipped for
now.
Please correct these values in the RQ_gesamt_20240917.xlsx.
(column: lebens_BC)
BM and PB samples collected <= 7 days apart. All assays per patient and date kept.
All datapoints from the “All time-points” plot that have “blin” in the columns visit or zeitp.
All datapoints from the “All time-points” plot that have “sct”/“szt”/“allo”/“tx”, but not “vor” in the columns visit or zeitp.
toDO-4: Distinguish B-myeloid and T-myeloid.
BM and BM-Trephine samples collected <= 7 days apart.
BM, BM-Trephine and PB triplets collected <= 7 days apart.
Density values capped at 100 for better resolution.
toDO-5:
Sample CTs <15 or >50 and those with no numeric values skipped for
now.
Please correct these values in the RQ_gesamt_20240917.xlsx.
(columns: ct_1, ct_2, ct_3, MW_ct )
Density values capped at 50 for better resolution.
Same dna-nr, different target.
Same dna-nr, different assays.
If more MRD values for a particular dna-nr/assay combination available, only the highest one was kept.
| Shortcut | Meaning |
|---|---|
| NEG | Negative |
| POS | Positive |
| PBQR | Positive Below Quantitative Range |
| UNEG | Uncertain Negative |